ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 457.00 62.52 2.68 100.0 MIR378C-201 miRNA sigmoid colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 162.00 68.64 0.95 78.26 MIR142HG-201 lncRNA sigmoid colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 5.00 2.12 0.03 4.67 MIR142HG-201 lncRNA sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 520.44 0.10 3.05 54.78 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 420.35 0.08 2.46 54.38 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 453745.00 85.59 2657.73 91.82 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 73227.00 13.81 428.91 89.38 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 82.00 1.63 0.48 100.0 MIR133A1HG-202 lncRNA sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4006.00 3.87 23.46 60.76 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 13673.00 13.22 80.09 53.71 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1097.00 1.06 6.43 100.0 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 65187.00 63.04 381.82 95.68 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 16933.00 16.37 99.18 95.64 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 2.00 28.57 0.01 28.57 ENST00000582320 lncRNA sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2080.00 10.07 12.18 100.0 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 9077.27 43.93 53.17 54.44 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 9021.02 43.66 52.84 50.47 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 2.00 0.00 0.01 100.0 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 426587.00 99.22 2498.66 99.86 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 25.00 0.01 0.15 100.0 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 86.00 34.26 0.50 100.0 MIR151B-201 miRNA sigmoid colon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 28.00 0.87 0.16 100.0 SNORD3A-201 snoRNA sigmoid colon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1757.00 23.19 10.29 100.0 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 4902.00 64.70 28.71 90.29 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3943.00 36.27 23.10 97.17 MIR23AHG-201 lncRNA sigmoid colon (Tissue)