ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 28.00 1.44 0.55 100.0 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 99.00 5.07 1.93 100.0 RNU5B-1-201 snRNA GM23248 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 179.00 8.33 3.50 68.32 RNY4P27-201 misc RNA GM23248 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 1260.00 58.60 24.62 93.82 RNY4P27-201 misc RNA GM23248 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 63.00 5.58 1.23 100.0 Y_RNA.136-201 misc RNA GM23248 (Cell line)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 4374.00 92.87 85.48 96.53 SNORD114-25-201 snoRNA GM23248 (Cell line)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 4909.00 93.38 95.94 100.0 SNORD113-7-201 snoRNA GM23248 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 31.00 41.33 0.61 100.0 Y_RNA.181-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 7.00 3.95 0.14 100.0 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 7.95 4.49 0.16 18.5 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 1.00 0.56 0.02 100.0 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 5.00 2.82 0.10 100.0 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 55.20 31.19 1.08 73.6 RNY1-201 misc RNA GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 20.00 1.42 0.39 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 33.70 2.39 0.66 4.48 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 23.00 1.63 0.45 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 8.00 0.57 0.16 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 1.00 0.07 0.02 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 18.40 1.31 0.36 40.88 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 9.00 0.64 0.18 100.0 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 24.06 1.71 0.47 49.1 RNA5SP202-201 rRNA pseudogene GM23248 (Cell line)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1955.00 54.92 38.21 100.0 SNORD114-9-201 snoRNA GM23248 (Cell line)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 1046.00 29.38 20.44 100.0 SNORD114-9-201 snoRNA GM23248 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 20.00 6.13 0.39 100.0 Y_RNA.234-201 misc RNA GM23248 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 54.00 1.18 1.06 100.0 RNA5SP141-201 rRNA pseudogene GM23248 (Cell line)