ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 10369.00 54.60 202.65 100.0 MIR222HG-206 lncRNA GM23248 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 5398.00 28.42 105.50 78.86 MIR222HG-206 lncRNA GM23248 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 635.00 3.34 12.41 100.0 MIR222HG-206 lncRNA GM23248 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 26.00 7.30 0.51 96.3 MIR99AHG-370 lncRNA GM23248 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 314.00 88.20 6.14 99.37 MIR99AHG-370 lncRNA GM23248 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 195.00 96.53 3.81 100.0 HPS4-237 retained intron GM23248 (Cell line)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 90.00 87.38 1.76 100.0 MEG8-253 lncRNA GM23248 (Cell line)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 8.00 11.11 0.16 100.0 MEG9-206 lncRNA GM23248 (Cell line)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 3.00 4.17 0.06 100.0 MEG9-206 lncRNA GM23248 (Cell line)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 19.00 26.39 0.37 100.0 MEG9-206 lncRNA GM23248 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 122.00 11.79 2.38 100.0 DNAJC5-203 nonsense mediated decay GM23248 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 45.00 10.23 0.88 100.0 ENST00000707189 TEC GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 1456.21 51.06 28.46 57.08 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 1.00 0.04 0.02 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 4.00 0.14 0.08 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 1226.95 43.02 23.98 45.61 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 21.00 0.74 0.41 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 3.00 0.11 0.06 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 16.00 0.56 0.31 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 21.00 0.74 0.41 100.0 MIR17HG-214 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 151.00 1.25 2.95 100.0 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 57.00 0.47 1.11 100.0 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 13.00 0.11 0.25 100.0 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 69.00 0.57 1.35 57.98 SNHG32-223 lncRNA GM23248 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 11631.00 95.95 227.31 100.0 SNHG32-223 lncRNA GM23248 (Cell line)