ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 32.00 0.66 0.63 74.42 ENST00000619323 lncRNA GM23248 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 4736.00 98.03 92.56 99.45 ENST00000619323 lncRNA GM23248 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 26.00 19.40 0.51 100.0 SCARNA4-202 scaRNA GM23248 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 10.00 62.50 0.20 100.0 ENST00000625572 miRNA GM23248 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 201.00 64.01 3.93 100.0 ENST00000628177 snoRNA GM23248 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 4651.00 94.76 90.90 100.0 ENST00000630615 snoRNA GM23248 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 50.00 24.75 0.98 100.0 DMRT2-209 protein coding GM23248 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 78.00 38.61 1.52 100.0 DMRT2-209 protein coding GM23248 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 30.00 8.29 0.59 100.0 SNORD98-201 snoRNA GM23248 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 253.00 69.89 4.94 100.0 SNORD98-201 snoRNA GM23248 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 1054.37 41.11 20.61 42.79 MIR106AHG-201 lncRNA GM23248 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 1.00 0.04 0.02 100.0 MIR106AHG-201 lncRNA GM23248 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 61.00 9.90 1.19 100.0 MEG8-222 lncRNA GM23248 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 303.00 49.19 5.92 100.0 MEG8-222 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 4.00 1.23 0.08 100.0 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 1.00 0.31 0.02 100.0 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 7.00 2.15 0.14 100.0 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 142.00 43.56 2.78 79.33 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 61.00 18.71 1.19 45.19 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 666.22 73.45 13.02 90.03 5S_rRNA.20-201 rRNA pseudogene GM23248 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 503.00 18.33 9.83 100.0 HSPA9-211 retained intron GM23248 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1610.00 58.67 31.46 85.59 HSPA9-211 retained intron GM23248 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 5794.00 90.04 113.23 100.0 DNM3OS-205 lncRNA GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 30.00 0.00 0.59 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 111.00 0.02 2.17 100.0 GAS5-230 retained intron GM23248 (Cell line)