ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 47.00 44.76 0.92 97.92 MIR486-1-201 miRNA GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 70.00 1.16 1.37 71.43 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 78.00 1.29 1.52 100.0 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 129.00 2.14 2.52 100.0 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 4641.00 76.95 90.70 85.56 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 85.00 3.00 1.66 61.59 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 3.28 0.12 0.06 65.67 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 30.00 1.06 0.59 100.0 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1198.00 42.27 23.41 100.0 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 83.00 2.93 1.62 100.0 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 60.00 2.12 1.17 41.38 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 0.86 0.03 0.02 17.18 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 1.00 33.33 0.02 100.0 MIR376A1-201 miRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 139.00 0.58 2.72 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 5702.00 23.76 111.44 98.45 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 2558.00 10.66 49.99 67.32 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 5693.00 23.73 111.26 70.6 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 1568.00 6.53 30.64 72.46 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 1.60 0.01 0.03 80.1 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 16.00 0.07 0.31 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 2.00 0.01 0.04 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 251.00 1.05 4.91 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 693.65 2.89 13.56 65.32 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 317.50 1.32 6.21 35.71 U2.3-201 snRNA GM23248 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 110.00 0.47 2.15 100.0 U2.6-201 snRNA GM23248 (Cell line)