ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 900.00 45.73 17.59 93.65 MIR23AHG-201 lncRNA GM23248 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 69.00 3.51 1.35 90.79 MIR23AHG-201 lncRNA GM23248 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 20.00 1.02 0.39 48.78 MIR23AHG-201 lncRNA GM23248 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 227.00 78.28 4.44 100.0 ODAD3-204 nonsense mediated decay GM23248 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1843.00 6.39 36.02 100.0 VMP1-217 retained intron GM23248 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 134.00 0.46 2.62 100.0 VMP1-217 retained intron GM23248 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 20262.00 70.28 395.99 78.08 VMP1-217 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 43.00 0.35 0.84 100.0 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 11213.76 91.83 219.16 94.85 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 224.86 1.84 4.39 1.9 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1.00 0.01 0.02 33.33 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 15.00 0.12 0.29 100.0 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 4.00 25.00 0.08 100.0 RPS11-206 retained intron GM23248 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 5.00 31.25 0.10 100.0 RPS11-206 retained intron GM23248 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1675.00 78.20 32.74 80.18 CARMN-209 lncRNA GM23248 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1007.00 60.66 19.68 100.0 SNORD114-21-201 snoRNA GM23248 (Cell line)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 296.00 17.83 5.78 100.0 SNORD114-21-201 snoRNA GM23248 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 178.00 97.80 3.48 100.0 MIR98-201 miRNA GM23248 (Cell line)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 4951.00 90.02 96.76 100.0 SNORD113-5-201 snoRNA GM23248 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 21.00 100.00 0.41 100.0 MIR15A-201 miRNA GM23248 (Cell line)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 22.00 78.57 0.43 100.0 MIR376C-201 miRNA GM23248 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 43.00 58.90 0.84 100.0 SNHG21-206 retained intron GM23248 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 13.00 37.14 0.25 100.0 SNORD11B-201 snoRNA GM23248 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 9.00 15.00 0.18 100.0 SNORD91B-201 snoRNA GM23248 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 113.00 24.41 2.21 52.8 SNORD91A-201 snoRNA GM23248 (Cell line)