ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 12.00 0.26 0.23 21.43 SNORD53B-201 snoRNA GM23248 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 33.00 66.00 0.64 100.0 ENST00000578036 lncRNA GM23248 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 404.00 87.45 7.90 100.0 RPL23A-207 protein coding GM23248 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 69.00 95.83 1.35 100.0 MIR744-201 miRNA GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 69.68 0.06 1.36 44.38 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 143.83 0.13 2.81 69.15 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 80729.00 73.23 1577.72 89.51 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 27730.00 25.15 541.94 93.59 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4929.00 8.04 96.33 53.12 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 6783.00 11.06 132.56 43.03 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 114.00 0.19 2.23 100.0 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 29070.00 47.39 568.13 92.44 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 18790.00 30.63 367.22 92.69 RPL17-211 retained intron GM23248 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 554.00 3.19 10.83 100.0 RPL17-214 retained intron GM23248 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 9403.94 54.15 183.79 59.78 RPL17-214 retained intron GM23248 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 7583.93 43.67 148.22 46.98 RPL17-214 retained intron GM23248 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 71.00 0.03 1.39 100.0 SNORD43-201 snoRNA GM23248 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 12.00 0.00 0.23 100.0 SNORD43-201 snoRNA GM23248 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 257277.00 99.28 5028.09 99.94 SNORD43-201 snoRNA GM23248 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 5.00 35.71 0.10 100.0 MIR151B-201 miRNA GM23248 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 15.00 2.99 0.29 100.0 SNORD3A-201 snoRNA GM23248 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 260.00 70.84 5.08 100.0 SNORD92-201 snoRNA GM23248 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 475.00 43.22 9.28 100.0 NSRP1-214 protein coding GM23248 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 501.00 45.59 9.79 88.99 NSRP1-214 protein coding GM23248 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 607.00 30.84 11.86 88.61 MIR23AHG-201 lncRNA GM23248 (Cell line)