ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 11.00 31.43 0.21 100.0 SNORD88A-201 snoRNA GM23248 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 9.00 100.00 0.18 100.0 MIR548K-201 miRNA GM23248 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 27.00 67.50 0.53 100.0 MIR320B2-201 miRNA GM23248 (Cell line)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 4.00 100.00 0.08 100.0 MIR1271-201 miRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 147.00 1.32 2.87 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 19.00 0.17 0.37 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 26.00 0.23 0.51 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 10647.00 95.82 208.08 100.0 SNORD100-201 snoRNA GM23248 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 152.00 45.37 2.97 100.0 SNORD111B-201 snoRNA GM23248 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 2.00 1.68 0.04 100.0 RNU2-36P-201 snRNA GM23248 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 51.00 42.86 1.00 100.0 RNU2-36P-201 snRNA GM23248 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 78.00 0.30 1.52 100.0 SNORD19C-201 snoRNA GM23248 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 24887.00 96.51 486.38 98.34 SNORD19C-201 snoRNA GM23248 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 57.00 0.22 1.11 100.0 SNORD12B-201 snoRNA GM23248 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 22560.00 87.94 440.90 99.99 SNORD12B-201 snoRNA GM23248 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1839.00 7.17 35.94 100.0 SNORD12B-201 snoRNA GM23248 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 69.00 38.76 1.35 100.0 Y_RNA.609-201 misc RNA GM23248 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 1.00 7.69 0.02 100.0 Y_RNA.612-201 misc RNA GM23248 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 38.00 0.64 0.74 100.0 SNORD71-201 snoRNA GM23248 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 47.00 0.80 0.92 100.0 SNORD71-201 snoRNA GM23248 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 5734.00 97.25 112.06 99.53 SNORD71-201 snoRNA GM23248 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 74.00 77.89 1.45 86.05 MIR194-2HG-201 lncRNA GM23248 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 19.00 20.00 0.37 63.33 MIR194-2HG-201 lncRNA GM23248 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 11.00 2.34 0.21 100.0 LINC01783-201 lncRNA GM23248 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 4.00 100.00 0.08 100.0 RPS7P15-201 processed pseudogene GM23248 (Cell line)