ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 9.00 100.00 0.18 100.0 MIR301B-201 miRNA GM23248 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 87.00 63.97 1.70 91.58 RNU1-82P-201 snRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 93.00 8.94 1.82 100.0 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 100.00 9.62 1.95 100.0 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 423.00 40.67 8.27 77.76 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 15.00 1.44 0.29 100.0 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 15.00 83.33 0.29 100.0 U3.17-201 snoRNA GM23248 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 79.00 54.48 1.54 100.0 SNORD17-201 snoRNA GM23248 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 542.00 74.45 10.59 100.0 SNORD72-201 snoRNA GM23248 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 158.00 77.07 3.09 100.0 SNORD70B-201 snoRNA GM23248 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 114.00 43.51 2.23 85.07 RNY4P18-201 misc RNA GM23248 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 812.00 69.11 15.87 100.0 SNORD90-201 snoRNA GM23248 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 279.00 23.74 5.45 68.05 SNORD90-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 5030.00 87.98 98.30 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 87.00 1.52 1.70 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 176.00 3.08 3.44 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 101.00 1.77 1.97 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 96.00 52.75 1.88 64.0 SNORD70-201 snoRNA GM23248 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 204.00 3.85 3.99 100.0 B4GALNT2-202 protein coding GM23248 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 4311.00 81.32 84.25 90.21 B4GALNT2-202 protein coding GM23248 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 69.00 95.83 1.35 100.0 NDE1-202 protein coding GM23248 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 7.00 43.75 0.14 100.0 MIR450B-201 miRNA GM23248 (Cell line)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 11.00 42.31 0.21 100.0 MIR887-201 miRNA GM23248 (Cell line)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 108.00 93.91 2.11 100.0 MIR889-201 miRNA GM23248 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 16.00 43.24 0.31 100.0 SNORD111-201 snoRNA GM23248 (Cell line)