ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 93.00 14.01 0.40 100.0 HCN2-201 protein coding stomach (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 6.00 26.09 0.03 100.0 SLC49A4-201 protein coding stomach (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 35.00 10.29 0.15 100.0 ATP5MC3-201 protein coding stomach (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 205.00 68.79 0.88 100.0 CDC25A-201 protein coding stomach (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 7461.00 93.75 32.09 100.0 RUNX3-201 protein coding stomach (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 215.00 24.88 0.92 100.0 BLOC1S4-201 protein coding stomach (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 206.00 13.98 0.89 100.0 ATAD5-201 protein coding stomach (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 139.00 7.84 0.60 100.0 SLITRK5-201 protein coding stomach (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 12.00 23.08 0.05 100.0 HASPIN-201 protein coding stomach (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 642.00 98.17 2.76 100.0 ATG101-201 protein coding stomach (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 42.00 47.73 0.18 100.0 PRICKLE1-201 protein coding stomach (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 2050.00 94.08 8.82 96.43 MIR133A2-201 miRNA stomach (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 8.00 42.11 0.03 100.0 PBLD-204 protein coding stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 273559.00 84.50 1176.69 95.79 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 24976.00 7.72 107.43 79.14 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 12423.00 4.27 53.44 59.33 MIR375-201 miRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 274080.00 94.26 1178.93 97.75 MIR375-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 6079.00 60.45 26.15 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 3400.00 33.81 14.62 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 346.00 44.76 1.49 100.0 MIR29A-201 miRNA stomach (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 56.00 62.92 0.24 100.0 MIR345-201 miRNA stomach (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 6906.00 98.67 29.71 100.0 MIR16-2-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 9.00 0.49 0.04 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1775.00 95.95 7.63 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1024.00 57.37 4.40 100.0 MIR107-201 miRNA stomach (Tissue)