ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 521.56 2.02 2.24 50.44 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 2988.00 11.55 12.85 71.4 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 2582.00 9.98 11.11 60.6 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 3444.00 13.31 14.81 65.5 RNU5A-1-201 snRNA stomach (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 1891.00 88.53 8.13 100.0 SNORD114-14-201 snoRNA stomach (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 1132.00 1.77 4.87 100.0 SNORD104-201 snoRNA stomach (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 2131.00 3.34 9.17 100.0 SNORD104-201 snoRNA stomach (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 99424.00 64.18 427.66 76.37 RNA5SP358-201 rRNA pseudogene stomach (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 43.00 1.38 0.18 55.13 RNA5SP145-201 rRNA pseudogene stomach (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 6.00 24.00 0.03 100.0 Y_RNA.105-201 misc RNA stomach (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 24.00 5.81 0.10 100.0 RNY4P9-201 misc RNA stomach (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 1411.00 13.73 6.07 100.0 RNU5B-1-201 snRNA stomach (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 3821.00 37.19 16.44 100.0 RNU5B-1-201 snRNA stomach (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 79.00 0.77 0.34 100.0 RNU5B-1-201 snRNA stomach (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 122.00 6.67 0.52 91.04 RNY4P27-201 misc RNA stomach (Tissue)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 50.00 2.73 0.22 80.65 RNY4P27-201 misc RNA stomach (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 1300.00 27.23 5.59 100.0 Y_RNA.136-201 misc RNA stomach (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 9952.00 94.91 42.81 98.89 SNORD114-25-201 snoRNA stomach (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 2749.00 91.00 11.82 100.0 SNORD113-7-201 snoRNA stomach (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 376.00 55.05 1.62 100.0 Y_RNA.181-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 991.00 14.02 4.26 100.0 RNY1-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 1431.48 20.26 6.16 65.36 RNY1-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 293.58 4.15 1.26 26.35 RNY1-201 misc RNA stomach (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 84.00 1.19 0.36 100.0 RNY1-201 misc RNA stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 12427.47 6.03 53.46 40.3 RNA5SP202-201 rRNA pseudogene stomach (Tissue)