ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 523.00 0.62 2.25 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 135.00 0.16 0.58 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 118.00 0.14 0.51 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 72.00 0.09 0.31 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 28090.50 33.48 120.83 36.9 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2490.00 1.93 10.71 70.96 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 5006.00 3.88 21.53 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 229.00 0.18 0.99 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 8.00 0.01 0.03 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 119250.00 92.51 512.94 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 8.00 0.04 0.03 100.0 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 17925.00 91.95 77.10 98.81 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 544.00 2.79 2.34 100.0 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 32.00 0.16 0.14 100.0 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 1679.00 85.40 7.22 100.0 B4GALT1-203 nonsense mediated decay stomach (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 1711.00 12.12 7.36 89.82 ENST00000722183 lncRNA stomach (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 1184.00 8.39 5.09 100.0 ENST00000722183 lncRNA stomach (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 203.00 1.44 0.87 100.0 ENST00000722183 lncRNA stomach (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 13.00 52.00 0.06 100.0 MIR34BHG-202 lncRNA stomach (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 9126.00 78.73 39.25 83.54 THBS3-AS1-228 lncRNA stomach (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 5401.00 64.28 23.23 100.0 MIR200CHG-202 lncRNA stomach (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 904.00 10.76 3.89 100.0 MIR200CHG-202 lncRNA stomach (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1677.00 30.85 7.21 100.0 SNHG16-266 lncRNA stomach (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 152.00 2.80 0.65 100.0 SNHG16-266 lncRNA stomach (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 654.00 12.03 2.81 100.0 SNHG16-266 lncRNA stomach (Tissue)