ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 20234.00 2.04 87.03 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 2424.00 0.24 10.43 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 58407.00 5.88 251.23 82.93 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 3581.00 0.36 15.40 88.59 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 35.00 0.00 0.15 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 35.00 0.00 0.15 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 12490.00 1.26 53.72 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2561.00 0.26 11.02 84.08 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1032.40 0.10 4.44 33.92 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1152.00 0.12 4.96 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 3089.00 0.31 13.29 66.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1272.00 0.13 5.47 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 186.00 0.02 0.80 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 909.00 2.23 3.91 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 5143.00 12.62 22.12 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 302.72 0.74 1.30 90.36 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 1678.00 4.12 7.22 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 253.00 0.62 1.09 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 36.79 0.09 0.16 10.98 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 13767.00 33.79 59.22 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 1897.00 4.66 8.16 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2654.00 6.51 11.42 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 9.00 0.00 0.04 100.0 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 2979.00 0.92 12.81 66.75 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 306323.00 95.01 1317.62 98.93 MEG8-251 lncRNA stomach (Tissue)