ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 3842.00 9.80 16.53 26.8 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 192.00 0.49 0.83 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 24215.00 61.79 104.16 87.75 ENST00000651540 lncRNA stomach (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 3495.00 0.63 15.03 100.0 MIRLET7A1HG-203 lncRNA stomach (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 2824.00 96.55 12.15 100.0 MEG8-225 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 3507.00 63.46 15.08 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 1295.00 23.43 5.57 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 29.00 0.52 0.12 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 748.00 8.76 3.22 100.0 SNHG14-234 lncRNA stomach (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 70.00 0.82 0.30 100.0 SNHG14-234 lncRNA stomach (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 1.00 0.00 0.00 0.02 ENST00000655317 lncRNA stomach (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 1942.00 8.38 8.35 100.0 ENST00000655317 lncRNA stomach (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 12008.00 51.83 51.65 87.87 ENST00000655317 lncRNA stomach (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 1997.00 2.20 8.59 71.91 LINC01962-202 lncRNA stomach (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 84667.00 93.24 364.19 100.0 LINC01962-202 lncRNA stomach (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 413.00 0.45 1.78 100.0 LINC01962-202 lncRNA stomach (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 15764.00 95.26 67.81 100.0 MEG8-228 lncRNA stomach (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 133.00 1.39 0.57 100.0 LIMD1-AS1-204 lncRNA stomach (Tissue)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 2168.00 22.64 9.33 95.0 LIMD1-AS1-204 lncRNA stomach (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 6911.00 54.04 29.73 75.32 MIR99AHG-262 lncRNA stomach (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 2543.00 19.88 10.94 100.0 MIR99AHG-262 lncRNA stomach (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 288.00 84.46 1.24 92.31 MIR9-2HG-225 lncRNA stomach (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 1258.00 38.10 5.41 100.0 MEG8-233 lncRNA stomach (Tissue)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 782.00 23.68 3.36 100.0 MEG8-233 lncRNA stomach (Tissue)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 392.00 11.50 1.69 100.0 MEG8-234 lncRNA stomach (Tissue)