ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 44.14 0.05 0.19 36.78 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 9.00 0.01 0.04 100.0 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 66.46 0.08 0.29 55.38 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 259.00 29.87 1.11 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 370.00 42.68 1.59 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 299.00 3.33 1.29 100.0 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 1921.00 21.39 8.26 83.27 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 1178.00 13.12 5.07 73.03 SNHG14-224 lncRNA stomach (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 8288.45 7.30 35.65 45.62 5S_rRNA.20-201 rRNA pseudogene stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 347.00 5.21 1.49 100.0 HSPA9-211 retained intron stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1624.00 24.37 6.99 43.88 HSPA9-211 retained intron stomach (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 5218.00 86.26 22.44 100.0 DNM3OS-205 lncRNA stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 224318.00 22.27 964.88 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 2666.00 0.26 11.47 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 267.00 0.03 1.15 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 3041.00 0.30 13.08 89.68 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 15.00 0.00 0.06 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 249.00 0.02 1.07 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 522.00 0.05 2.25 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 726697.00 72.15 3125.81 99.89 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 423.00 0.04 1.82 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 9269.00 0.92 39.87 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 681.00 0.07 2.93 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 244.00 0.02 1.05 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 3194.00 0.32 13.74 100.0 GAS5-230 retained intron stomach (Tissue)