ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 279.00 0.78 1.20 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 615.00 1.72 2.65 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 5519.00 15.45 23.74 54.15 NOP56-219 retained intron stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 19582.59 34.64 84.23 45.5 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 108.00 0.19 0.46 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 4602.00 8.14 19.80 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 14.00 0.02 0.06 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 22799.16 40.33 98.07 52.97 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 1.00 50.00 0.00 100.0 MIR376A1-201 miRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 372.00 3.38 1.60 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 21.00 0.19 0.09 58.33 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 10.00 0.09 0.04 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 143.00 1.30 0.62 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 937.00 8.53 4.03 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1625.00 12.51 6.99 100.0 U2.6-201 snRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 123.00 0.21 0.53 10.59 ENST00000619323 lncRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 55335.00 95.84 238.02 97.29 ENST00000619323 lncRNA stomach (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 502.00 23.89 2.16 100.0 SCARNA4-202 scaRNA stomach (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 886.00 79.96 3.81 100.0 ENST00000625572 miRNA stomach (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 844.00 77.36 3.63 100.0 ENST00000630615 snoRNA stomach (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 189.00 41.45 0.81 100.0 DMRT2-209 protein coding stomach (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 52.00 11.40 0.22 100.0 DMRT2-209 protein coding stomach (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1322.00 46.47 5.69 100.0 SNORD98-201 snoRNA stomach (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 433.00 15.22 1.86 100.0 SNORD98-201 snoRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 52797.14 65.53 227.10 68.92 MIR106AHG-201 lncRNA stomach (Tissue)