ENCFF574WUG

Library Details

Organism: Homo Sapiens
Biosample: right lobe of liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR634VLA
Description: Part of ENCODE experiment ENCSR634VLA. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 382.00 3.79 3.19 100.0 TMEM107-204 protein coding right lobe of liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3591.00 35.64 29.95 92.72 TMEM107-204 protein coding right lobe of liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 2331.00 23.13 19.44 69.13 TMEM107-204 protein coding right lobe of liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 14.00 0.14 0.12 100.0 TMEM107-204 protein coding right lobe of liver (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 441.00 51.22 3.68 100.0 SNHG16-201 lncRNA right lobe of liver (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 21010.00 86.45 175.24 96.2 SNORD105B-201 snoRNA right lobe of liver (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 708.00 26.67 5.91 35.78 SNORD121B-201 snoRNA right lobe of liver (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 1992.00 79.49 16.62 100.0 SNORD127-201 snoRNA right lobe of liver (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 5290.00 92.13 44.12 100.0 SNORD42B-201 snoRNA right lobe of liver (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 16.00 0.58 0.13 100.0 RNY4P25-201 misc RNA right lobe of liver (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 750.00 88.03 6.26 100.0 SNORD121A-201 snoRNA right lobe of liver (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2836.00 88.57 23.65 100.0 SNORD126-201 snoRNA right lobe of liver (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 731.00 48.67 6.10 100.0 SNHG12-201 retained intron right lobe of liver (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2350.00 95.57 19.60 100.0 SMC1A-204 retained intron right lobe of liver (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 3.00 0.06 0.03 100.0 RABGGTB-208 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 827.00 50.03 6.90 100.0 DDX39B-219 retained intron right lobe of liver (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 167.00 10.10 1.39 100.0 DDX39B-219 retained intron right lobe of liver (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 15.00 0.91 0.13 100.0 DDX39B-219 retained intron right lobe of liver (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1282.00 80.99 10.69 100.0 RPS8-206 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 65.00 2.13 0.54 100.0 RPL13-207 retained intron right lobe of liver (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1943.00 63.68 16.21 100.0 RPL13-207 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 74000.00 9.18 617.23 83.08 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1360.00 0.17 11.34 52.8 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3530.00 0.44 29.44 48.17 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1002.00 0.12 8.36 56.74 EIF4A2-219 retained intron right lobe of liver (Tissue)