ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 38.00 10.61 0.46 100.0 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 20.58 5.75 0.25 62.37 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 6.51 1.82 0.08 34.25 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 17.00 4.75 0.20 100.0 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 470.07 1.79 5.64 37.79 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 325.00 1.24 3.90 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 65.00 0.25 0.78 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 1056.00 4.02 12.67 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 1202.09 4.58 14.42 44.32 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 1840.00 7.01 22.07 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 1592.27 6.06 19.10 53.92 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 238.00 0.91 2.86 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 291.00 1.11 3.49 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 41.00 20.00 0.49 100.0 Y_RNA.234-201 misc RNA HT-29 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 55.00 0.16 0.66 100.0 RNA5S9-201 rRNA HT-29 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 1537.00 5.64 18.44 100.0 RNA5SP141-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 150.00 86.71 1.80 100.0 ENST00000364722 snoRNA HT-29 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 713.00 80.93 8.55 100.0 SNORD52-201 snoRNA HT-29 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 357.00 24.24 4.28 29.68 SNORD117-201 snoRNA HT-29 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 926.00 62.86 11.11 72.17 SNORD117-201 snoRNA HT-29 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 1.00 100.00 0.01 100.0 SNORD114-3-201 snoRNA HT-29 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 3.00 0.32 0.04 100.0 RNA5SP298-201 rRNA pseudogene HT-29 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 145.00 3.87 1.74 100.0 SNORD38A-201 snoRNA HT-29 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 14.00 0.37 0.17 100.0 SNORD38A-201 snoRNA HT-29 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 3505.00 93.59 42.05 100.0 SNORD38A-201 snoRNA HT-29 (Cell line)