ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 96.00 1.35 1.15 100.0 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 630.00 8.85 7.56 77.78 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 204.00 2.87 2.45 44.16 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 173.60 2.44 2.08 43.18 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 191.00 2.68 2.29 58.05 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 86.00 1.21 1.03 100.0 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 215.88 3.03 2.59 61.33 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 246.14 3.46 2.95 39.83 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 2.00 1.83 0.02 100.0 SNORD104-201 snoRNA HT-29 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 5.00 4.59 0.06 100.0 SNORD104-201 snoRNA HT-29 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 1492.00 49.18 17.90 87.4 RNA5SP358-201 rRNA pseudogene HT-29 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 5.00 0.01 0.06 62.5 RNA5SP145-201 rRNA pseudogene HT-29 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 1.00 7.14 0.01 100.0 Y_RNA.105-201 misc RNA HT-29 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 26.00 35.62 0.31 100.0 RNY4P9-201 misc RNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 63.00 4.08 0.76 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 9.00 0.58 0.11 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 202.00 13.08 2.42 61.96 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 16.00 1.04 0.19 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 135.00 8.74 1.62 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 185.00 11.98 2.22 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 183.00 53.51 2.20 95.31 RNY4P27-201 misc RNA HT-29 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 57.00 16.67 0.68 86.36 RNY4P27-201 misc RNA HT-29 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 29.00 16.38 0.35 100.0 Y_RNA.136-201 misc RNA HT-29 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 14.00 45.16 0.17 100.0 Y_RNA.181-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 5.00 1.40 0.06 100.0 RNY1-201 misc RNA HT-29 (Cell line)