ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 27175.69 22.27 326.01 28.08 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 38.00 0.03 0.46 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 23.00 0.02 0.28 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 88220.54 72.30 1058.33 76.67 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 304.00 0.25 3.65 69.25 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 9.00 0.01 0.11 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 499.00 0.41 5.99 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 126.00 0.10 1.51 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3631.00 2.98 43.56 88.91 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 24.00 44.44 0.29 100.0 FMN2-209 protein coding CDS not defined HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 11.00 1.49 0.13 73.33 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 93.00 12.60 1.12 100.0 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 77.00 10.43 0.92 100.0 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 184.00 24.93 2.21 100.0 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 4.00 0.54 0.05 26.67 LINC02739-203 lncRNA HT-29 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 11.00 20.00 0.13 100.0 SNHG10-212 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 31920.11 84.19 382.93 86.82 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 4963.40 13.09 59.54 28.04 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 0.93 0.00 0.01 93.24 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.01 72.05 SNHG19-202 lncRNA HT-29 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2100.00 62.20 25.19 100.0 MIR222HG-206 lncRNA HT-29 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 814.00 24.11 9.77 84.18 MIR222HG-206 lncRNA HT-29 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 105.00 3.11 1.26 100.0 MIR222HG-206 lncRNA HT-29 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 4.00 15.38 0.05 100.0 RPSA-216 retained intron HT-29 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1.00 7.14 0.01 100.0 MIR99AHG-370 lncRNA HT-29 (Cell line)