ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 39679.00 7.36 476.01 97.58 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 111.00 0.02 1.33 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 16.00 0.00 0.19 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 91.00 0.02 1.09 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 1490.00 0.28 17.87 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 210.00 0.04 2.52 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 733.00 0.14 8.79 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 235.00 0.04 2.82 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 27.00 0.01 0.32 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 105615.00 19.59 1267.00 97.37 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 18.00 0.00 0.22 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 61576.00 11.42 738.69 95.41 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 80.00 0.01 0.96 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 22.00 0.00 0.26 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 2.00 0.00 0.02 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 28725.00 5.33 344.60 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 114.00 0.02 1.37 67.46 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 92.03 0.02 1.10 39.16 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 13.00 0.00 0.16 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 85.00 0.02 1.02 46.2 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 23.00 0.00 0.28 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 121.00 0.02 1.45 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 1793.00 0.33 21.51 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 1.00 100.00 0.01 100.0 SNHG14-315 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 120.00 0.10 1.44 100.0 SNHG5-273 lncRNA HT-29 (Cell line)