ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 160.00 0.05 1.92 38.65 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 2930.00 0.94 35.15 99.29 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 109.00 0.03 1.31 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 15.00 0.00 0.18 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 218.00 0.07 2.62 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 179774.00 57.70 2156.64 98.42 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 61.00 0.02 0.73 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 770.00 0.25 9.24 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 844.00 0.27 10.12 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 100.00 0.03 1.20 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2557.00 0.82 30.67 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 15.00 0.00 0.18 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 9.00 0.00 0.11 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 65.00 0.02 0.78 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 73.00 0.02 0.88 48.34 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 274.00 0.09 3.29 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 11372.00 3.65 136.42 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 5713.00 1.83 68.54 99.56 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 52753.00 16.93 632.85 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 24.00 0.01 0.29 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 3865.00 1.24 46.37 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 38173.00 12.25 457.94 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 934.00 0.30 11.20 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 7.00 2.36 0.08 100.0 FTX-219 lncRNA HT-29 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 200.00 67.34 2.40 86.96 FTX-219 lncRNA HT-29 (Cell line)