ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 2.00 0.02 0.02 4.88 SNORD53B-201 snoRNA HT-29 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 5485.00 66.44 65.80 67.19 SNORD53B-201 snoRNA HT-29 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 39.00 0.47 0.47 95.12 SNORD53B-201 snoRNA HT-29 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 167.00 95.43 2.00 100.0 ENST00000578036 lncRNA HT-29 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2076.00 94.15 24.90 100.0 RPL23A-207 protein coding HT-29 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 54.00 91.53 0.65 100.0 MIR744-201 miRNA HT-29 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 12.00 100.00 0.14 100.0 MIR378C-201 miRNA HT-29 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 4.00 21.05 0.05 26.67 MIR142HG-201 lncRNA HT-29 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 3.00 15.79 0.04 20.0 MIR142HG-201 lncRNA HT-29 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 244.00 8.29 2.93 100.0 SNORD3C-201 snoRNA HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 105.58 0.05 1.27 54.15 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 83.92 0.04 1.01 54.14 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 83099.00 43.18 996.89 60.5 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 108477.00 56.37 1301.34 91.48 RPL23A-208 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 540.00 0.45 6.48 18.79 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 625.00 0.52 7.50 9.32 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 407.00 0.34 4.88 100.0 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 83039.00 68.46 996.17 99.53 RPL17-211 retained intron HT-29 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 34724.00 28.63 416.56 99.12 RPL17-211 retained intron HT-29 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 754.00 5.95 9.05 100.0 RPL17-214 retained intron HT-29 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 3347.37 26.41 40.16 34.33 RPL17-214 retained intron HT-29 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 7625.51 60.16 91.48 67.59 RPL17-214 retained intron HT-29 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 9.00 0.01 0.11 100.0 SNORD43-201 snoRNA HT-29 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 164864.00 99.39 1977.78 99.72 SNORD43-201 snoRNA HT-29 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 33.00 0.02 0.40 100.0 SNORD43-201 snoRNA HT-29 (Cell line)