ENCFF534JKI

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR307FBN
Description: Part of ENCODE experiment ENCSR307FBN. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 29853.15 46.92 123.71 66.12 RPL17-214 retained intron spleen (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 15711.47 24.69 65.11 34.17 RPL17-214 retained intron spleen (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 523034.00 98.50 2167.50 99.93 SNORD43-201 snoRNA spleen (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 151.00 0.03 0.63 100.0 SNORD43-201 snoRNA spleen (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 111.00 31.53 0.46 100.0 MIR151B-201 miRNA spleen (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 56.00 0.84 0.23 100.0 SNORD3A-201 snoRNA spleen (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2041.00 16.26 8.46 100.0 NSRP1-214 protein coding spleen (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5717.00 45.53 23.69 61.9 NSRP1-214 protein coding spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1313.00 25.12 5.44 93.05 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1134.00 21.70 4.70 86.37 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1093.00 20.91 4.53 94.39 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 342.00 6.54 1.42 66.8 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 20.00 38.46 0.08 100.0 ODAD3-204 nonsense mediated decay spleen (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1525.00 2.70 6.32 100.0 VMP1-217 retained intron spleen (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 187.00 0.33 0.77 100.0 VMP1-217 retained intron spleen (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 36034.00 63.73 149.33 72.83 VMP1-217 retained intron spleen (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1892.00 36.39 7.84 100.0 C19orf48P-203 retained intron spleen (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 166.00 3.19 0.69 100.0 C19orf48P-203 retained intron spleen (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 587166.00 82.42 2433.27 83.8 CARMN-209 lncRNA spleen (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 178.00 52.05 0.74 100.0 PPFIA1P1-201 processed pseudogene spleen (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 404.00 23.68 1.67 100.0 SNORD114-21-201 snoRNA spleen (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 908.00 53.22 3.76 100.0 SNORD114-21-201 snoRNA spleen (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 5276.00 92.46 21.86 100.0 MIR98-201 miRNA spleen (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 26.00 27.37 0.11 100.0 SNORD113-5-201 snoRNA spleen (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 859.00 94.60 3.56 100.0 MIR15A-201 miRNA spleen (Tissue)