ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 23841.00 14.70 242.01 57.32 RACK1-230 retained intron OCI-LY7 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 134934.00 83.20 1369.71 89.03 RACK1-230 retained intron OCI-LY7 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 43.00 12.01 0.44 100.0 RNA5SP486-201 rRNA pseudogene OCI-LY7 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 205.00 61.93 2.08 100.0 SCARNA5-201 scaRNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 297.00 0.36 3.01 49.09 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 669.00 0.81 6.79 82.39 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 191.00 0.23 1.94 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 23870.00 28.94 242.30 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 16.00 0.02 0.16 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 256.00 0.31 2.60 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 7546.00 9.15 76.60 98.14 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 1867.00 2.26 18.95 82.79 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 3.00 0.00 0.03 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 773.00 0.94 7.85 73.83 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 3612.00 4.38 36.67 94.98 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 860.00 1.04 8.73 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 198.00 93.40 2.01 99.0 MIR3142HG-201 lncRNA OCI-LY7 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 1207.00 72.45 12.25 100.0 SNHG6-204 retained intron OCI-LY7 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 74.00 32.31 0.75 100.0 MIR151A-201 miRNA OCI-LY7 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 129.00 56.33 1.31 85.43 MIR151A-201 miRNA OCI-LY7 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 612.00 93.44 6.21 100.0 DENND3-221 protein coding OCI-LY7 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 2.00 0.00 0.02 100.0 WDR74-204 protein coding OCI-LY7 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 29.00 0.00 0.29 52.73 WDR74-204 protein coding OCI-LY7 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 2021.00 0.32 20.52 82.76 WDR74-204 protein coding OCI-LY7 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 26.00 0.00 0.26 47.27 WDR74-204 protein coding OCI-LY7 (Cell line)