ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 8540.00 89.35 7.15 100.0 HCN2-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 238.00 68.59 0.20 100.0 SLC49A4-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 83.00 7.62 0.07 100.0 ATP5MC3-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 865.00 88.27 0.72 100.0 CDC25A-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 22.00 15.07 0.02 100.0 RUNX3-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 45.00 17.86 0.04 100.0 BLOC1S4-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 459.00 43.59 0.38 100.0 ATAD5-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 87.00 6.98 0.07 100.0 SLITRK5-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 286.00 62.31 0.24 100.0 HASPIN-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 1.00 0.61 0.00 100.0 PRR14L-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 299.00 92.86 0.25 100.0 ATG101-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 47.00 20.52 0.04 100.0 PRICKLE1-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 461.00 96.44 0.39 100.0 MIR133A2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 400.00 64.21 0.34 100.0 PBLD-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 76040.00 96.84 63.70 99.57 MIRLET7BHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 694.00 0.88 0.58 96.93 MIRLET7BHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 62325.00 96.29 52.21 98.88 MIR375-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1557.00 2.41 1.30 69.05 MIR375-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 5253.00 14.68 4.40 100.0 MIR30E-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 28614.00 79.99 23.97 100.0 MIR30E-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 404.00 55.19 0.34 100.0 MIR29A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 3263.00 85.82 2.73 100.0 MIR345-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 21859.00 98.63 18.31 100.0 MIR16-2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 89.00 1.90 0.07 100.0 MIR340-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 4418.00 94.50 3.70 100.0 MIR340-201 miRNA hepatocyte (In vitro differentiated cells)