ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 16874.93 40.45 14.14 50.12 ENST00000797550 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 9952.02 23.85 8.34 29.56 ENST00000797550 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 1396.00 3.35 1.17 90.18 ENST00000797550 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 808249.00 87.96 677.11 95.79 MIR181A1HG-212 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 2316.00 0.25 1.94 100.0 MIR181A1HG-212 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 410.00 14.73 0.34 100.0 C19orf48P-218 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 1263.00 45.38 1.06 100.0 C19orf48P-218 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 77965.00 89.50 65.32 95.33 SNHG18-220 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 216.00 20.97 0.18 100.0 ENST00000817026 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 128.00 0.70 0.11 100.0 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 451.44 2.48 0.38 50.67 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 1169.26 6.41 0.98 59.93 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 752.00 4.13 0.63 100.0 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 3958.00 21.72 3.32 99.42 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 926.12 5.08 0.78 48.09 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 1046.44 5.74 0.88 36.35 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 451.00 2.47 0.38 78.16 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 352.88 1.94 0.30 34.9 ENST00000823279 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 902.45 4.95 0.76 69.53 ENST00000823801 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 132.00 90.41 0.11 97.78 ENST00000827714 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 3.00 2.05 0.00 2.22 ENST00000827714 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 7264.00 5.90 6.09 100.0 GAS5-377 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 107.00 0.09 0.09 100.0 GAS5-377 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 3964.00 3.22 3.32 100.0 GAS5-377 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 108233.00 87.93 90.67 100.0 GAS5-377 lncRNA hepatocyte (In vitro differentiated cells)