ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 13537.00 29.34 11.34 72.26 SNHG14-288 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 26691.00 57.86 22.36 88.0 SNHG14-288 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 397.00 11.25 0.33 100.0 SNHG14-295 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 145.00 65.61 0.12 100.0 MEG8-240 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 25635.00 48.19 21.48 100.0 SNHG14-303 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 423.00 2.25 0.35 100.0 SNHG14-306 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_59_82_+ 59–82 25.00 0.13 0.02 100.0 SNHG14-306 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 15562.00 82.60 13.04 99.34 SNHG14-306 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 63.00 0.33 0.05 100.0 SNHG14-306 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 139.00 4.43 0.12 100.0 ENST00000666735 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 157.00 5.00 0.13 100.0 ENST00000666735 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 761.00 82.90 0.64 100.0 MEG8-242 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 14072.63 20.53 11.79 23.32 SNHG14-312 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 46397.22 67.69 38.87 76.89 SNHG14-312 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 238.00 0.35 0.20 100.0 SNHG14-312 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 19.00 0.06 0.02 100.0 MEG8-244 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 36.00 0.12 0.03 100.0 MEG8-244 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 29495.00 98.93 24.71 99.62 MEG8-244 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 4599.00 0.05 3.85 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 216.00 0.00 0.18 100.0 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 16444.00 0.18 13.78 98.39 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 3437.05 0.04 2.88 51.03 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 3625.00 0.04 3.04 89.97 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 4200689.00 45.76 3519.15 99.35 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 758.00 0.01 0.64 63.22 SNHG1-248 lncRNA hepatocyte (In vitro differentiated cells)