ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 1294.00 2.15 1.08 41.43 LINC01962-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 53915.00 89.59 45.17 100.0 LINC01962-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 499.00 0.83 0.42 100.0 LINC01962-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 37746.00 30.85 31.62 95.2 SNHG14-241 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 5334.00 96.53 4.47 100.0 MEG8-228 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 16125.00 42.79 13.51 100.0 SNHG14-254 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 13286.00 10.49 11.13 100.0 SNHG14-261 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 81410.00 64.31 68.20 91.47 SNHG14-261 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 308.00 1.95 0.26 100.0 LIMD1-AS1-204 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 8215.00 51.93 6.88 100.0 LIMD1-AS1-204 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 1763.00 11.14 1.48 89.0 LIMD1-AS1-204 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 25475.00 74.80 21.34 90.15 MIR99AHG-262 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 3533.00 10.37 2.96 100.0 MIR99AHG-262 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000660376.1 ENST00000660376.1_1_78_+ 1–78 104.00 3.66 0.09 100.0 SNHG14-266 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 7300.00 79.60 6.12 100.0 SNHG14-270 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 1715.00 0.53 1.44 100.0 SNHG14-275 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 1.00 0.25 0.00 100.0 MIR9-2HG-225 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 53.00 13.22 0.04 96.36 MIR9-2HG-225 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 83.00 29.86 0.07 100.0 MEG8-233 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 103.00 37.05 0.09 100.0 MEG8-233 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 13873.00 3.82 11.62 100.0 SNHG14-278 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 310506.00 85.56 260.13 94.53 SNHG14-278 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 474.00 52.61 0.40 100.0 MEG8-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 122.00 13.54 0.10 100.0 MEG8-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 7260.00 92.52 6.08 100.0 SNHG17-252 lncRNA hepatocyte (In vitro differentiated cells)