ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 983.00 0.83 0.82 100.0 VMP1-217 retained intron hepatocyte (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 67507.00 57.22 56.55 63.92 VMP1-217 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1700.00 0.06 1.42 100.0 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 2234934.40 75.00 1872.33 78.02 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 640433.85 21.49 536.53 21.76 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 14598.00 0.49 12.23 89.48 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 289.00 0.01 0.24 100.0 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 45.00 0.00 0.04 100.0 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 188.00 78.33 0.16 100.0 ENST00000597420 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 12597.00 50.74 10.55 100.0 RPS11-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 8935.00 35.99 7.49 100.0 RPS11-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 367446.00 86.00 307.83 86.98 CARMN-209 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1822.00 44.54 1.53 100.0 ENST00000602478 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 99.00 20.12 0.08 100.0 PPFIA1P1-201 processed pseudogene hepatocyte (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 626.00 70.02 0.52 100.0 SNORD114-21-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 106.00 11.86 0.09 100.0 SNORD114-21-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 7069.00 66.66 5.92 100.0 SNORD115-40-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2742.00 96.52 2.30 100.0 MIR98-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 3668.00 96.70 3.07 100.0 SNORD113-5-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 415.00 91.81 0.35 100.0 MIR15A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 11.00 78.57 0.01 100.0 MIR376C-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1426.00 62.68 1.19 100.0 SNHG21-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 27606.00 94.81 23.13 100.0 SNORD11B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 9725.00 82.28 8.15 100.0 SNORD91B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 1.00 3.33 0.00 100.0 MIR219A2HG-201 lncRNA hepatocyte (In vitro differentiated cells)