ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 92.00 0.01 0.08 100.0 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 6300.00 0.39 5.28 100.0 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 432.00 39.74 0.36 100.0 GABRE-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 14.00 0.00 0.01 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 657.00 0.10 0.55 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 285.00 0.05 0.24 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 894.00 0.14 0.75 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 95270.00 15.05 79.81 79.98 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 3351.00 0.53 2.81 100.0 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1152.00 0.18 0.97 70.55 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 476160.00 75.24 398.91 99.04 RPL13A-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 394.00 1.01 0.33 100.0 RPL7A-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 22673.00 58.39 18.99 69.78 RPL7A-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 436.00 1.12 0.37 100.0 RPL7A-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 4206.00 11.44 3.52 100.0 RN7SL2-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 2259.00 6.15 1.89 32.47 RN7SL2-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 7.00 30.43 0.01 100.0 RGS11-208 retained intron hepatocyte (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 8502.00 2.70 7.12 95.6 NOP56-217 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 249298.00 79.11 208.85 83.11 NOP56-217 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 4165.00 0.48 3.49 100.0 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 7164.00 0.83 6.00 100.0 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 994.00 0.11 0.83 43.44 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 552825.00 63.90 463.13 90.46 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 209095.00 24.17 175.17 94.54 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 1351.00 0.16 1.13 100.0 RABGGTB-213 protein coding CDS not defined hepatocyte (In vitro differentiated cells)