ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 7164.00 82.40 6.00 100.0 RPS8-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 6615.00 0.44 5.54 100.0 RPL13-207 retained intron hepatocyte (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 1499261.00 98.68 1256.01 99.81 RPL13-207 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 27.00 0.00 0.02 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 20858.00 1.12 17.47 81.24 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 10336.00 0.56 8.66 88.78 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 7072.00 0.38 5.92 78.03 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 2623.00 0.14 2.20 71.35 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 359.00 0.02 0.30 52.64 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3782.00 0.20 3.17 51.89 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 230176.00 12.37 192.83 78.74 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 904.00 0.05 0.76 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 1536420.00 82.59 1287.14 99.27 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 5914.00 0.32 4.95 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1290.00 0.07 1.08 55.89 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 4540.00 0.24 3.80 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1748.00 0.09 1.46 100.0 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 870.00 0.05 0.73 28.11 EIF4A2-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 122905.00 97.32 102.96 100.0 RPS8-207 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 1322.00 23.40 1.11 100.0 RPL7A-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 2143.00 37.93 1.80 100.0 RPL7A-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 424.00 7.50 0.36 100.0 RPL7A-206 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 6300.00 0.39 5.28 100.0 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 2508.00 0.16 2.10 100.0 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 272942.00 16.91 228.66 99.09 RPL21-209 retained intron hepatocyte (In vitro differentiated cells)