ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 885.00 5.06 0.74 77.16 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 3352.00 19.16 2.81 100.0 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 5058.00 28.91 4.24 79.42 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 122.00 0.70 0.10 100.0 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 21515.00 74.08 18.02 93.04 SNHG16-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 4924.00 16.95 4.13 100.0 SNHG16-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 7.00 0.28 0.01 100.0 SNHG14-207 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 285560.00 91.34 239.23 96.0 SNORD105B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 4165.00 45.49 3.49 57.24 SNORD121B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 60.00 0.03 0.05 100.0 SNORD127-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 192836.00 97.57 161.55 99.36 SNORD127-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 107939.00 96.21 90.43 100.0 SNORD42B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 566.00 6.29 0.47 100.0 RNY4P25-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 6137.00 74.60 5.14 100.0 SNORD121A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 17536.00 83.68 14.69 94.12 SNORD126-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2773.00 13.23 2.32 57.36 SNORD126-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 50851.00 96.92 42.60 98.55 SNORD124-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 196.00 4.98 0.16 100.0 SNHG12-201 retained intron hepatocyte (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 15516.00 44.63 13.00 100.0 RPL3-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 9576.00 27.54 8.02 72.95 RPL3-212 retained intron hepatocyte (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 39715.00 97.77 33.27 100.0 SMC1A-204 retained intron hepatocyte (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 345450.00 93.05 289.40 98.4 RABGGTB-208 protein coding CDS not defined hepatocyte (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 17681.00 61.18 14.81 87.03 DDX39B-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 998.00 3.45 0.84 100.0 DDX39B-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 2324.00 8.04 1.95 100.0 DDX39B-219 retained intron hepatocyte (In vitro differentiated cells)