ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 64516.15 28.00 54.05 31.8 MIR182-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 30887.00 93.90 25.88 95.26 MIR100-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 5124.00 93.91 4.29 100.0 MIR301A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 13464.00 43.10 11.28 72.03 MIR130A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 17549.00 56.18 14.70 73.61 MIR130A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 83600.00 98.78 70.04 99.61 MIRLET7F2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 359.00 67.35 0.30 100.0 MIR652-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 8.00 100.00 0.01 100.0 MIR653-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 3497.00 79.05 2.93 100.0 MIR140-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 397.00 23.39 0.33 76.94 MIR106B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 407.00 23.98 0.34 100.0 MIR106B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 297481.00 47.61 249.22 97.54 SNORD83A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 316178.00 50.60 264.88 97.51 SNORD83A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 30828.00 80.48 25.83 100.0 SNORD41-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 113.00 3.96 0.09 67.66 MT-TF-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 78.00 2.74 0.07 100.0 MT-TF-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 346.00 12.14 0.29 57.76 MT-TF-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 2776.00 17.34 2.33 100.0 MT-TV-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 57194.00 30.09 47.91 90.64 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 166.00 0.09 0.14 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 307.00 0.16 0.26 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 351.00 0.18 0.29 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 41388.00 21.78 34.67 85.55 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 3330.00 1.75 2.79 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 1180.00 0.62 0.99 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)