ENCFF000JJI

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of adipose (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVD
Description: Part of ENCODE experiment ENCSR000CVD. The libraries contained in this experiment come from adipose derived mesenchymal stem cell primary whole cells, hMSC-AT isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 410924.00 61.53 16857.17 95.1 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.04 100.0 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 2866.00 0.43 117.57 100.0 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 97069.00 14.53 3982.02 70.86 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 8.00 0.15 0.33 100.0 ENST00000651540 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 3062.00 58.52 125.61 100.0 ENST00000651540 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 89785.00 13.03 3683.21 98.56 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 557259.00 80.86 22860.21 95.93 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 2215.00 0.32 90.87 100.0 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1762.00 0.26 72.28 100.0 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 17.00 1.13 0.70 100.0 ENST00000655317 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2945.00 13.97 120.81 100.0 SNHG1-248 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 3759.00 17.83 154.20 100.0 SNHG1-248 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 8035.00 38.11 329.62 100.0 SNHG1-248 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1161.00 1.49 47.63 100.0 SNHG5-273 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 20439.00 26.25 838.46 74.63 SNHG5-273 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 41163.00 52.86 1688.61 88.54 SNHG5-273 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 982.00 87.37 40.28 100.0 SNHG14-336 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1199.00 63.57 49.19 100.0 NCL-216 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 14750.99 49.21 605.12 68.79 SNHG19-202 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 6884.84 22.97 282.43 35.5 SNHG19-202 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 651.00 37.54 26.71 100.0 SNHG8-214 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 13281.00 87.63 544.82 100.0 ENST00000722183 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 138715.00 86.12 5690.45 100.0 ENST00000747512 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 23789.00 91.60 975.89 100.0 ENST00000772672 lncRNA mesenchymal stem cell of adipose (Primary cell)