ENCFF000JJI

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of adipose (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVD
Description: Part of ENCODE experiment ENCSR000CVD. The libraries contained in this experiment come from adipose derived mesenchymal stem cell primary whole cells, hMSC-AT isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 262.00 12.93 10.75 100.0 RACK1-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 7829.00 4.66 321.17 100.0 SNHG6-204 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 153241.00 91.18 6286.34 100.0 SNHG6-204 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 24.00 2.17 0.98 45.28 WDR74-204 protein coding mesenchymal stem cell of adipose (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 4276.00 55.37 175.41 68.6 HSPA8-211 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 7514.00 77.66 308.24 100.0 RPS13-208 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 20301.00 73.88 832.80 100.0 HSPA8-215 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 3657.00 67.06 150.02 100.0 RPL4-214 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 12512.00 38.62 513.27 100.0 ENST00000570843 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 11042.00 34.09 452.97 100.0 ENST00000570843 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 3.81 0.04 0.16 27.19 C19orf48P-203 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 8.65 0.09 0.35 78.62 C19orf48P-203 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 2815.00 28.49 115.48 100.0 C19orf48P-203 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 342.00 21.76 14.03 100.0 RPS11-206 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 49.00 1.89 2.01 100.0 ENST00000602478 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 2177.00 51.19 89.31 100.0 NOP56-219 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1.00 0.43 0.04 100.0 RNA5-8SN2-201 rRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 97.25 0.59 3.99 33.42 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 5435.00 33.15 222.96 100.0 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 8.00 0.05 0.33 100.0 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 178.63 1.09 7.33 61.38 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 1.74 0.01 0.07 28.97 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 1.55 0.01 0.06 77.63 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1.00 0.06 0.04 100.0 U2.6-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 872.00 0.13 35.77 100.0 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)