ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 682.00 24.44 2.70 62.74 MIR194-2HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 1232.00 10.54 4.87 100.0 LINC01783-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 13.00 92.86 0.05 100.0 RPS7P15-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 498.00 13.01 1.97 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 5.00 0.13 0.02 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 776.00 20.27 3.07 94.87 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 746.00 19.49 2.95 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 147.00 3.84 0.58 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 21.00 91.30 0.08 100.0 MRPL32-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 12.00 66.67 0.05 100.0 ENST00000436739 lncRNA esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 387.00 7.73 1.53 72.74 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1058.00 21.14 4.18 77.34 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 4.00 0.08 0.02 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 75.00 1.50 0.30 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 665.00 13.29 2.63 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1476.00 70.79 5.83 94.49 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 189.00 9.06 0.75 100.0 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 6.00 9.09 0.02 100.0 SNHG14-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 35054.00 92.90 138.57 97.64 SNORD105B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 438.00 39.04 1.73 54.07 SNORD121B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 666.00 2.38 2.63 100.0 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 26581.00 94.82 105.07 99.36 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 11392.00 93.20 45.03 100.0 SNORD42B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 70.00 0.33 0.28 100.0 RNY4P25-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 376.00 43.67 1.49 100.0 SNORD121A-201 snoRNA esophagus squamous epithelium (Tissue)