ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 371.00 49.73 1.47 100.0 KRTAP19-1-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 120.00 40.68 0.47 100.0 MIR708-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 1.00 50.00 0.00 100.0 MIR543-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 13.00 76.47 0.05 100.0 MIR301B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 295.00 13.94 1.17 58.07 RNU1-82P-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 3083.00 31.17 12.19 81.54 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1182.00 11.95 4.67 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1479.00 14.95 5.85 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 128.00 1.29 0.51 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 17.00 22.67 0.07 100.0 U3.17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1709.00 87.82 6.76 100.0 SNORD17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 370.00 47.19 1.46 100.0 SNORD72-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 481.00 58.73 1.90 100.0 SNORD70B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 18131.00 86.77 71.67 93.36 RNY4P18-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 11981.00 84.25 47.36 100.0 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1541.00 10.84 6.09 70.4 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 886.00 3.53 3.50 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 22037.00 87.79 87.11 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 542.00 2.16 2.14 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 572.00 2.28 2.26 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 975.00 48.10 3.85 58.77 SNORD70-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 367.00 1.91 1.45 100.0 B4GALNT2-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 12049.00 62.54 47.63 86.35 B4GALNT2-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 472.00 86.13 1.87 100.0 NDE1-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 8.00 72.73 0.03 100.0 MIR450B-201 miRNA esophagus squamous epithelium (Tissue)