ENCFF503PBD

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 5.00 0.04 0.05 100.0 SNORD3A-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 7.00 1.25 0.07 100.0 SNORD92-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 42954.00 59.66 407.26 100.0 NSRP1-214 protein coding mesendoderm (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 23050.00 32.02 218.55 93.3 NSRP1-214 protein coding mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1572.00 10.47 14.90 49.45 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 8246.00 54.94 78.18 96.28 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 311.00 2.07 2.95 58.35 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 501.00 3.34 4.75 75.11 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 54.00 30.68 0.51 100.0 ODAD3-204 nonsense mediated decay mesendoderm (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 6718.00 1.86 63.70 100.0 VMP1-217 retained intron mesendoderm (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 23.00 0.01 0.22 100.0 VMP1-217 retained intron mesendoderm (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 310558.00 86.05 2944.52 89.25 VMP1-217 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 546.18 2.33 5.18 59.17 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 5371.00 22.87 50.92 100.0 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 802.58 3.42 7.61 65.89 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 5.00 0.02 0.05 71.43 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 5636.00 23.99 53.44 100.0 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 9059.00 79.43 85.89 100.0 ENST00000597420 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 3145.00 69.87 29.82 71.25 CARMN-209 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 40.00 27.59 0.38 100.0 PPFIA1P1-201 processed pseudogene mesendoderm (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1.00 3.57 0.01 100.0 SNORD114-21-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 15.00 53.57 0.14 100.0 SNORD114-21-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 32.00 64.00 0.30 100.0 MIR98-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 1411.00 92.95 13.38 100.0 MIR15A-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 5.00 100.00 0.05 100.0 MIR376C-201 miRNA mesendoderm (In vitro differentiated cells)