ENCFF503PBD

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 17.00 0.25 0.16 100.0 RPL4-202 retained intron mesendoderm (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 614.00 8.87 5.82 100.0 RPL4-202 retained intron mesendoderm (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 930.00 13.44 8.82 100.0 RPL4-202 retained intron mesendoderm (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 2077.00 30.01 19.69 100.0 RPL4-202 retained intron mesendoderm (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 11727.00 17.92 111.19 100.0 ENST00000563103 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 99.00 0.81 0.94 100.0 RPL4-207 retained intron mesendoderm (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 192.00 1.57 1.82 100.0 RPL4-207 retained intron mesendoderm (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 23.00 0.56 0.22 82.14 ENST00000565336 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 53.00 1.29 0.50 70.67 ENST00000565336 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2446.00 50.96 23.19 100.0 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 2.00 0.04 0.02 100.0 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 117.00 2.44 1.11 100.0 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 755.00 15.73 7.16 100.0 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1.00 0.03 0.01 100.0 RPL4-214 retained intron mesendoderm (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 91.00 3.00 0.86 100.0 RPL4-214 retained intron mesendoderm (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 43.18 1.47 0.41 59.15 POLG-DT-202 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 16.94 0.58 0.16 67.78 POLG-DT-202 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 5683.00 15.39 53.88 100.0 ENST00000570843 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 724.00 67.79 6.86 100.0 MIR497HG-207 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 221313.00 99.73 2098.35 99.92 MIR22HG-212 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 267.00 27.90 2.53 87.83 SNORD53B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 16.00 1.67 0.15 41.03 SNORD53B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 37.00 3.87 0.35 12.17 SNORD53B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 845.00 93.89 8.01 100.0 ENST00000578036 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 368.00 18.92 3.49 100.0 RPL23A-207 protein coding mesendoderm (In vitro differentiated cells)