ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 399.00 81.26 0.79 100.0 SNORD121A-201 snoRNA Peyer's patch (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 4140.00 98.67 8.24 100.0 SNORD126-201 snoRNA Peyer's patch (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1636.00 57.85 3.26 100.0 SNHG12-201 retained intron Peyer's patch (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2777.00 97.40 5.53 100.0 SMC1A-204 retained intron Peyer's patch (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 554.00 40.92 1.10 100.0 DDX39B-219 retained intron Peyer's patch (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 12.00 0.89 0.02 100.0 DDX39B-219 retained intron Peyer's patch (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 129.00 9.53 0.26 100.0 DDX39B-219 retained intron Peyer's patch (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1533.00 83.27 3.05 100.0 RPS8-206 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 5477.00 40.04 10.91 100.0 RPL13-207 retained intron Peyer's patch (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 2128.00 15.56 4.24 99.91 RPL13-207 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 734.00 0.34 1.46 100.0 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4463.00 2.04 8.89 85.83 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 28158.00 12.88 56.07 57.55 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 4500.00 2.06 8.96 67.83 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 338.00 0.15 0.67 34.28 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 260.00 0.12 0.52 38.75 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 18992.00 8.69 37.82 80.27 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 121033.00 55.36 240.99 98.32 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2291.00 1.05 4.56 23.06 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2198.00 1.01 4.38 49.05 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1080.00 0.49 2.15 100.0 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 183.00 0.08 0.36 30.55 EIF4A2-219 retained intron Peyer's patch (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 31.00 9.42 0.06 100.0 RPS8-207 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 256.00 22.92 0.51 100.0 RPL7A-206 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 189.00 16.92 0.38 100.0 RPL7A-206 protein coding CDS not defined Peyer's patch (Tissue)