ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 271.00 49.36 2.21 100.0 RNY3-201 misc RNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 837.00 29.20 6.83 91.98 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 135.00 4.71 1.10 100.0 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 60.00 2.09 0.49 78.95 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 444.52 15.51 3.63 51.21 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 430.52 15.02 3.51 49.6 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 443.00 15.46 3.62 100.0 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 35.00 1.22 0.29 100.0 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 72.00 93.51 0.59 97.3 MIR146B-201 miRNA A375 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 8.00 28.57 0.07 100.0 SNHG20-201 lncRNA A375 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 4.00 2.50 0.03 100.0 ATP5MK-205 protein coding A375 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 25.00 15.62 0.20 100.0 ATP5MK-205 protein coding A375 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 1.00 1.15 0.01 100.0 LINC01556-201 lncRNA A375 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 18.00 56.25 0.15 100.0 ATAD3A-202 protein coding A375 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 45.00 45.45 0.37 57.69 TMC5-202 protein coding A375 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 372.00 96.62 3.04 100.0 ZMYM2-203 protein coding A375 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 33.00 3.24 0.27 100.0 RNVU1-7-201 snRNA A375 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 5677.00 92.38 46.33 100.0 SNORD24-201 snoRNA A375 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 15.00 88.24 0.12 100.0 Y_RNA.389-201 misc RNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 4809.00 9.33 39.25 90.02 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 45813.00 88.89 373.92 99.08 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 33.00 0.06 0.27 100.0 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 17.00 0.03 0.14 100.0 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 42498.00 98.98 346.86 100.0 SNORD37-201 snoRNA A375 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 30207.00 81.38 246.55 95.45 SNORD59A-201 snoRNA A375 (Cell line)