ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 604.00 70.73 4.93 100.0 SNORD52-201 snoRNA A375 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 254.00 17.14 2.07 21.47 SNORD117-201 snoRNA A375 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 1010.00 68.15 8.24 79.91 SNORD117-201 snoRNA A375 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 3.00 75.00 0.02 75.0 SNORD114-3-201 snoRNA A375 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 2.00 0.12 0.02 100.0 RNA5SP298-201 rRNA pseudogene A375 (Cell line)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 1.00 50.00 0.01 100.0 SNORD115-10-201 snoRNA A375 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 389.00 5.80 3.17 100.0 SNORD38A-201 snoRNA A375 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 29.00 0.43 0.24 100.0 SNORD38A-201 snoRNA A375 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 6120.00 91.18 49.95 100.0 SNORD38A-201 snoRNA A375 (Cell line)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 5.00 100.00 0.04 100.0 SNORD114-20-201 snoRNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 175.00 5.27 1.43 85.37 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 7.00 0.21 0.06 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 187.00 5.63 1.53 63.82 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 31.00 0.93 0.25 62.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 618.00 18.61 5.04 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 99.00 2.98 0.81 76.74 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 47.00 1.42 0.38 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 297.00 8.95 2.42 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 116.00 3.49 0.95 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 2104.00 73.16 17.17 100.0 SNORD14C-201 snoRNA A375 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 7.00 2.95 0.06 100.0 RNA5SP77-201 rRNA pseudogene A375 (Cell line)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 7.00 20.59 0.06 100.0 SNORD114-22-201 snoRNA A375 (Cell line)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 23.00 67.65 0.19 95.83 SNORD114-22-201 snoRNA A375 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 17384.00 93.44 141.89 100.0 SNORD6-201 snoRNA A375 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 53.00 0.28 0.43 100.0 SNORD6-201 snoRNA A375 (Cell line)