ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 9398.17 54.13 76.71 75.76 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 8.00 0.05 0.07 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 35.00 0.20 0.29 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 3194.85 18.40 26.08 27.15 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 364.00 2.10 2.97 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 102.00 0.59 0.83 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 177.00 1.02 1.44 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 326.00 0.76 2.66 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 36.00 0.08 0.29 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 10.00 0.02 0.08 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2497.00 5.82 20.38 91.7 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 39495.00 92.02 322.35 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 13941.00 95.15 113.78 97.62 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 36.00 0.25 0.29 100.0 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 44.00 0.30 0.36 100.0 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 30.00 0.20 0.24 100.0 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 183.00 91.04 1.49 100.0 B4GALT1-203 nonsense mediated decay A375 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 9.00 2.56 0.07 100.0 ENST00000722183 lncRNA A375 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 62.00 17.61 0.51 68.13 ENST00000722183 lncRNA A375 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 40.00 11.36 0.33 100.0 ENST00000722183 lncRNA A375 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 581.00 37.61 4.74 47.27 THBS3-AS1-228 lncRNA A375 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 1.00 50.00 0.01 100.0 MIR200CHG-202 lncRNA A375 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 70.00 9.26 0.57 100.0 SNHG16-266 lncRNA A375 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 72.00 9.52 0.59 100.0 SNHG16-266 lncRNA A375 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 21.00 2.78 0.17 100.0 SNHG16-266 lncRNA A375 (Cell line)