ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 12.00 42.86 0.10 66.67 MEG8-251 lncRNA A375 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 8374.00 82.24 68.35 95.47 SNHG14-336 lncRNA A375 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 1530.00 15.03 12.49 19.39 SNHG14-336 lncRNA A375 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 5765.00 90.05 47.05 97.12 SNHG14-341 lncRNA A375 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 15.00 42.86 0.12 100.0 FMN2-209 protein coding CDS not defined A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 31.00 2.25 0.25 100.0 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 580.00 42.06 4.73 100.0 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 3.00 0.22 0.02 16.67 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 15.00 1.09 0.12 83.33 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 185.00 13.42 1.51 100.0 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 13.00 17.57 0.11 100.0 SNHG10-212 lncRNA A375 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 50814.18 82.88 414.74 86.4 SNHG19-202 lncRNA A375 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 8241.23 13.44 67.26 27.66 SNHG19-202 lncRNA A375 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.01 72.05 SNHG19-202 lncRNA A375 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3264.00 51.30 26.64 100.0 MIR222HG-206 lncRNA A375 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1438.00 22.60 11.74 61.32 MIR222HG-206 lncRNA A375 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 129.00 2.03 1.05 100.0 MIR222HG-206 lncRNA A375 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 8.00 10.81 0.07 100.0 RPSA-216 retained intron A375 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 4.00 1.27 0.03 66.67 MIR99AHG-370 lncRNA A375 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 301.00 95.25 2.46 98.37 MIR99AHG-370 lncRNA A375 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 562.00 98.77 4.59 100.0 HPS4-237 retained intron A375 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 61.00 12.50 0.50 100.0 DNAJC5-203 nonsense mediated decay A375 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 30.00 15.08 0.24 100.0 ENST00000707189 TEC A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 84.00 0.48 0.69 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 3328.00 19.17 27.16 100.0 MIR17HG-214 lncRNA A375 (Cell line)