ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 42.00 0.01 0.34 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 4.00 0.00 0.03 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 2.00 0.00 0.02 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 982.00 0.26 8.01 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 4136.70 1.11 33.76 43.65 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 4065.40 1.09 33.18 49.13 U2.3-201 snRNA A375 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 225.00 0.06 1.84 100.0 U2.6-201 snRNA A375 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 28.00 0.47 0.23 41.18 ENST00000619323 lncRNA A375 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 5924.00 98.44 48.35 99.21 ENST00000619323 lncRNA A375 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 95.00 21.64 0.78 100.0 SCARNA4-202 scaRNA A375 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 87.00 63.04 0.71 100.0 ENST00000625572 miRNA A375 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1887.00 83.46 15.40 100.0 ENST00000628177 snoRNA A375 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 16249.00 96.48 132.62 100.0 ENST00000630615 snoRNA A375 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 15.00 23.08 0.12 100.0 DMRT2-209 protein coding A375 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 17.00 26.15 0.14 100.0 DMRT2-209 protein coding A375 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 12.00 8.96 0.10 100.0 SNORD98-201 snoRNA A375 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 71.00 52.99 0.58 100.0 SNORD98-201 snoRNA A375 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 2680.70 21.74 21.88 24.16 MIR106AHG-201 lncRNA A375 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 2.00 0.02 0.02 100.0 MIR106AHG-201 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 1003.00 4.25 8.19 93.83 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 11761.00 49.87 95.99 97.35 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 2926.00 12.41 23.88 100.0 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 5188.00 22.00 42.34 96.59 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 5.00 0.02 0.04 100.0 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 125.00 0.53 1.02 37.65 SNHG14-224 lncRNA A375 (Cell line)