ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 91.00 0.05 0.74 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 201.00 0.11 1.64 76.72 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 71.00 0.04 0.58 43.83 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 480.00 0.26 3.92 83.48 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 176.00 0.09 1.44 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 124381.00 66.62 1015.18 98.81 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 523.00 0.28 4.27 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 209.00 0.11 1.71 72.07 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 6.00 0.00 0.05 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 10.00 0.01 0.08 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 646.00 0.35 5.27 92.42 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 551.00 0.30 4.50 74.86 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 257.00 0.14 2.10 54.68 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 11640.00 98.47 95.00 100.0 RPS8-207 protein coding CDS not defined A375 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 361.00 37.84 2.95 100.0 RPL7A-206 protein coding CDS not defined A375 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 54.00 5.66 0.44 100.0 RPL7A-206 protein coding CDS not defined A375 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 24.00 2.52 0.20 100.0 RPL7A-206 protein coding CDS not defined A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 60.00 0.02 0.49 100.0 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 220498.00 74.83 1799.68 97.67 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 10.00 0.00 0.08 100.0 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 255.00 0.09 2.08 100.0 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 71791.00 24.36 585.95 99.35 RPL21-209 retained intron A375 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 6.00 66.67 0.05 100.0 GABRE-209 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 2.00 0.00 0.02 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 5.00 0.01 0.04 100.0 RPL13A-212 retained intron A375 (Cell line)