ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 1116.00 19.07 3.68 86.38 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 458.00 7.83 1.51 100.0 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 329.00 5.62 1.08 79.09 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 19.00 0.32 0.06 100.0 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 135.00 2.31 0.45 34.79 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 205.00 3.50 0.68 81.35 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 152.00 2.60 0.50 65.52 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 2953.17 6.13 9.74 45.53 5S_rRNA.20-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1979.00 8.59 6.52 100.0 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 12685.00 55.08 41.82 77.01 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 2262.00 41.80 7.46 100.0 DNM3OS-205 lncRNA esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 8394.00 1.38 27.67 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 320.00 0.05 1.05 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 4795.00 0.79 15.81 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 317.00 0.05 1.04 57.22 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 21483.00 3.53 70.82 97.34 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 218.00 0.04 0.72 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 57.00 0.01 0.19 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 248.00 0.04 0.82 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 298144.00 49.04 982.82 99.7 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 819.00 0.13 2.70 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 13416.00 2.21 44.23 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 6884.00 1.13 22.69 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1779.00 0.29 5.86 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 10638.00 1.75 35.07 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)