ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 372.00 5.15 1.23 100.0 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 53.00 75.71 0.17 100.0 RGS11-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 37679.00 86.09 124.21 90.13 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 613.00 1.40 2.02 86.34 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 3784.00 1.48 12.47 88.47 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 149.00 0.06 0.49 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 189.00 0.07 0.62 40.56 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2169.00 0.85 7.15 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4608.00 1.80 15.19 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 277.00 0.11 0.91 59.44 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 231257.00 90.31 762.33 96.59 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 6666.00 87.14 21.97 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 612.00 8.00 2.02 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 238.00 3.32 0.78 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 6370.00 88.74 21.00 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 932.00 23.61 3.07 100.0 ZBED9-AS1-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3817.00 87.99 12.58 100.0 RPS3A-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 31669.00 99.21 104.40 100.0 COX7C-203 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 14011.92 36.94 46.19 45.11 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 21896.60 57.72 72.18 63.18 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 1385.00 3.65 4.57 98.02 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 266.00 0.70 0.88 100.0 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 83975.00 49.28 276.82 82.33 RACK1-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 82888.00 48.65 273.24 74.48 RACK1-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 113.00 2.20 0.37 100.0 RNA5SP486-201 rRNA pseudogene esophagus squamous epithelium (Tissue)