ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2657.00 74.26 8.76 93.66 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 20378.00 95.56 67.18 97.55 SNORD124-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 496.00 23.54 1.64 100.0 SNHG12-201 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 4734.00 39.38 15.61 100.0 RPL3-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 3970.00 33.03 13.09 66.88 RPL3-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3323.00 96.21 10.95 100.0 SMC1A-204 retained intron esophagus squamous epithelium (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 141488.00 96.44 466.41 99.32 RABGGTB-208 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 2566.00 56.30 8.46 87.85 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 159.00 3.49 0.52 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 462.00 10.14 1.52 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3212.00 88.51 10.59 100.0 RPS8-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 613.00 0.33 2.02 100.0 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 184565.00 98.80 608.41 99.81 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4000.00 0.58 13.19 88.63 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 180756.00 26.24 595.86 81.9 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 554.00 0.08 1.83 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 473350.00 68.72 1560.38 98.28 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 3033.00 0.44 10.00 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 770.00 0.11 2.54 57.46 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 66.00 0.01 0.22 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 35.00 0.01 0.12 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 4863.00 0.71 16.03 72.36 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1204.00 0.17 3.97 58.76 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1577.00 0.23 5.20 49.31 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 276.00 0.04 0.91 27.91 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)